ФЭНДОМ


   LOCUS       NC_009792            4720462 bp    DNA     circular BCT 14-SEP-2007
   DEFINITION  Citrobacter koseri ATCC BAA-895, complete genome.
   ACCESSION   NC_009792
   VERSION     NC_009792.1  GI:157144296
   KEYWORDS    .
   SOURCE      Citrobacter koseri ATCC BAA-895
     ORGANISM  Citrobacter koseri ATCC BAA-895
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Citrobacter.
   REFERENCE   1  (bases 1 to 4720462)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (13-SEP-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   2  (bases 1 to 4720462)
     AUTHORS   McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J.,
               Clifton,W.S., Latreille,P., Courtney,L., Pepin,K., Bhonagiri,V.,
               Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R.
     CONSRTM   The Citrobacter koseri Genome Sequencing Project
     TITLE     Direct Submission
     JOURNAL   Submitted (29-AUG-2007) Genetics, Genome Sequencing Center, 4444
               Forest Park Parkway, St. Louis, MO 63108, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000822.
               Citrobacter (diversus) koseri--Citrobacter cells are isolated from
               water, sewage, soils, and food, as well as from the feces of man
               and other animals, where they may be normal inhabitants. They can
               be found in urine, sputum, and other clinical specimens. They can
               sometimes be opportunistic pathogens particularly in
               immunocompromised patients in hospitals or in infants (Pepperell et
               al., Antimicrob Agents Chemother. 2002 Nov;46(11):3555-60. and
               references therein).
               
               The strain of Citrobacter koseri being sequenced, strain CDC
               4225-83, was isolated in 1983 in Maryland, where it caused neonatal
               meningitis. It was provided by Caroline Mohr and Melissa Campbell
               of CDC. The strain is available from the American Type Culture
               Collection as ATCC BAA-895 or from the Salmonella Genetic Stock
               Centre as SGSC4696. The genome was sequenced to 8X coverage, using
               plasmid and fosmid libraries and was finished to an error rate of
               less than 1 per 10,000 bases. Automated annotation was performed
               and manual annotation will continue in the labs of Michael
               McClelland and Kenneth Sanderson. The National Institute of Allergy
               and Infectious Diseases (NIAID), National Institutes of Health
               (NIH) has funded this project.
               
               Coding sequences below are predicted using GeneMark v3.3 and
               Glimmer2 v2.13.Intergenic regions not spanned by GeneMark and
               Glimmer2 were blasted against NCBI's non-redundant (NR) database
               and predictions generated based on protein alignments. RNA genes
               were determined usingtRNAscan-SE 1.23 or Rfam v8.0. This sequence
               was finished as follows unless otherwise noted: all regions were
               double stranded, sequenced with an alternate chemistries or covered
               by high quality data (i.e., phred quality >=30); an attempt was
               made to resolve all sequencing problems, such as compressions and
               repeats; all regions were covered by sequence from more than one
               m13 subclone.
               COMPLETENESS: full length.


Расположение РНК Править

Начало Конец Направление Длина PID Ген COG Комментарий
93820 94351 + 532 157144296 CKO_00097 - small subunit ribosomal RNA
95422 95494 + 73 157144296 CKO_00098 - 04</sub> Glu tRNA
98685 98800 + 116 157144296 CKO_00100 - 5S ribosomal RNA
98854 98927 + 74 157144296 CKO_00101 - 06</sub> Asp tRNA
98939 99011 + 73 157144296 CKO_00102 - 20</sub> Trp tRNA
135992 136065 + 74 157144296 CKO_00138 - 11</sub> Arg tRNA
136123 136195 + 73 157144296 CKO_00139 - 09</sub> His tRNA
136218 136301 + 84 157144296 CKO_00140 - 15</sub> Leu tRNA
136348 136421 + 74 157144296 CKO_00141 - 03</sub> Pro tRNA
136745 136918 + 174 157144296 CKO_00143 - SraJ RNA
183783 184314 + 532 157144296 CKO_00194 - small subunit ribosomal RNA
185385 185457 + 73 157144296 CKO_00195 - 04</sub> Glu tRNA
185648 188554 + 2907 157144296 CKO_05140 - 23S ribosomal RNA
188754 188869 + 116 157144296 CKO_00196 - 5S ribosomal RNA
209092 209255 + 164 157144296 CKO_00215 - rncO
222308 222456 - 149 157144296 CKO_00230 - tke1 RNA
263515 263605 + 91 157144296 CKO_00271 - SroE RNA
374321 374393 - 73 157144296 CKO_00392 - 10</sub> Lys tRNA
374401 374473 - 73 157144296 CKO_00393 - 13</sub> Val tRNA
374523 374595 - 73 157144296 CKO_00394 - 13</sub> Val tRNA
374643 374715 - 73 157144296 CKO_00395 - 13</sub> Val tRNA
377442 377514 + 73 157144296 CKO_00399 - 02</sub> Ala tRNA
377557 377629 + 73 157144296 CKO_00400 - 02</sub> Ala tRNA
426990 427061 - 72 157144296 CKO_00442 - 11</sub> Arg tRNA
542543 542636 - 94 157144296 CKO_00555 - MicF RNA
566488 566561 - 74 157144296 CKO_00585 - 03</sub> Pro tRNA
674317 674401 - 85 157144296 CKO_00700 - RyeE RNA
687309 687454 - 146 157144296 CKO_00708 - QUAD RNA
800575 800647 - 73 157144296 CKO_00836 - 07</sub> Asn tRNA
802386 802458 + 73 157144296 CKO_00838 - 07</sub> Asn tRNA
953774 953846 - 73 157144296 CKO_00954 - 07</sub> Asn tRNA
956184 956256 - 73 157144296 CKO_00957 - 07</sub> Asn tRNA
957248 957334 + 87 157144296 CKO_00959 - 08</sub> Ser tRNA
984590 984673 + 84 157144296 CKO_00989 - DsrA RNA
1023182 1023254 + 73 157144296 CKO_01035 - 01</sub> Gly tRNA
1023310 1023380 + 71 157144296 CKO_01036 - 19</sub> Cys tRNA
1023396 1023479 + 84 157144296 CKO_01037 - 15</sub> Leu tRNA
1098835 1099086 - 252 157144296 CKO_01129 - SraC/RyeA RNA
1098949 1099048 + 100 157144296 CKO_01128 - RyeB RNA
1138324 1138409 + 86 157144296 CKO_01176 - SroD RNA
1277805 1277975 - 171 157144296 CKO_01307 - RtT RNA
1277986 1278067 - 82 157144296 CKO_01308 - 18</sub> Tyr tRNA
1278107 1278188 - 82 157144296 CKO_01309 - 18</sub> Tyr tRNA
1336961 1337033 + 73 157144296 CKO_01376 - 12</sub> Thr tRNA
1369954 1370028 + 75 157144296 CKO_01416 - C0343 RNA
1374933 1375056 + 124 157144296 CKO_01424 - MicC RNA
1404801 1404864 - 64 157144296 CKO_01453 - RydC RNA
1612447 1612520 + 74 157144296 CKO_01680 - 13</sub> Val tRNA
1612528 1612601 + 74 157144296 CKO_01681 - 13</sub> Val tRNA
1650169 1650276 + 108 157144296 CKO_01724 - RprA RNA
1727130 1727213 + 84 157144296 CKO_01819 - RyhB RNA
1737545 1737628 + 84 157144296 CKO_01831 - RyhB RNA
1839505 1839672 - 168 157144296 CKO_01971 - SraB RNA
1889176 1889260 + 85 157144296 CKO_02038 - 08</sub> Ser tRNA
1937270 1937354 - 85 157144296 CKO_02094 - 08</sub> Ser tRNA
2036117 2036201 + 85 157144296 CKO_02195 - 08</sub> Ser tRNA
2095842 2095920 + 79 157144296 CKO_02261 - RybB RNA
2217689 2217761 - 73 157144296 CKO_02392 - 10</sub> Lys tRNA
2217897 2217969 - 73 157144296 CKO_02393 - 10</sub> Lys tRNA
2218118 2218190 - 73 157144296 CKO_02394 - 10</sub> Lys tRNA
2218197 2218269 - 73 157144296 CKO_02395 - 13</sub> Val tRNA
2218309 2218381 - 73 157144296 CKO_02396 - 10</sub> Lys tRNA
2307417 2307490 + 74 157144296 CKO_02492 - 16</sub> Met tRNA
2307502 2307583 + 82 157144296 CKO_02493 - 15</sub> Leu tRNA
2307610 2307681 + 72 157144296 CKO_02494 - 05</sub> Gln tRNA
2307721 2307792 + 72 157144296 CKO_02495 - 05</sub> Gln tRNA
2307812 2307885 + 74 157144296 CKO_02497 - 16</sub> Met tRNA
2307895 2307966 + 72 157144296 CKO_02498 - 05</sub> Gln tRNA
2308012 2308083 + 72 157144296 CKO_02499 - 05</sub> Gln tRNA
2316478 2316640 + 163 157144296 CKO_02508 - SroC RNA
2423929 2424002 - 74 157144296 CKO_02617 - 11</sub> Arg tRNA
2470084 2470164 - 81 157144296 CKO_02667 - SroB RNA
2504936 2505033 - 98 157144296 CKO_02703 - bacterial signal recognition particle RNA
2733973 2734045 - 73 157144296 CKO_02951 - 12</sub> Thr tRNA
2749265 2749338 - 74 157144296 CKO_02967 - 06</sub> Asp tRNA
2757586 2757659 - 74 157144296 CKO_02977 - 06</sub> Asp tRNA
2757713 2757828 - 116 157144296 CKO_02978 - 5S ribosomal RNA
2761018 2761090 - 73 157144296 CKO_02980 - 04</sub> Glu tRNA
2762161 2762692 - 532 157144296 CKO_02981 - small subunit ribosomal RNA
2791690 2791762 - 73 157144296 CKO_03012 - 12</sub> Thr tRNA
2791771 2791842 - 72 157144296 CKO_03013 - 01</sub> Gly tRNA
2791963 2792044 - 82 157144296 CKO_03014 - 18</sub> Tyr tRNA
2792056 2792128 - 73 157144296 CKO_03015 - 12</sub> Thr tRNA
2795660 2795775 - 116 157144296 CKO_03020 - 5S ribosomal RNA
2799061 2799133 - 73 157144296 CKO_03021 - 02</sub> Ala tRNA
2799250 2799323 - 74 157144296 CKO_03022 - 14</sub> Ile tRNA
2800379 2800910 - 532 157144296 CKO_03023 - small subunit ribosomal RNA
2809327 2809437 + 111 157144296 CKO_03033 - OxyS RNA
2917339 2917592 - 254 157144296 CKO_03148 - CsrC RNA family
2918742 2918860 - 119 157144296 CKO_03150 - Spot 42 RNA
2926347 2926462 - 116 157144296 CKO_03160 - 5S ribosomal RNA
2929640 2929712 - 73 157144296 CKO_03162 - 02</sub> Ala tRNA
2929829 2929902 - 74 157144296 CKO_03163 - 14</sub> Ile tRNA
2930958 2931489 - 532 157144296 CKO_03164 - small subunit ribosomal RNA
2964474 2964612 - 139 157144296 CKO_03200 - t44 RNA
3076986 3077058 - 73 157144296 CKO_03310 - SgrS RNA
3192511 3192594 + 84 157144296 CKO_03424 - 15</sub> Leu tRNA
3192625 3192708 + 84 157144296 CKO_03425 - 15</sub> Leu tRNA
3192744 3192827 + 84 157144296 CKO_03426 - 15</sub> Leu tRNA
3291775 3291856 - 82 157144296 CKO_03533 - 15</sub> Leu tRNA
3411306 3411378 - 73 157144296 CKO_03670 - 01</sub> Gly tRNA
3411450 3411522 - 73 157144296 CKO_03671 - 01</sub> Gly tRNA
3440370 3440442 + 73 157144296 CKO_03702 - 17</sub> Phe tRNA
3641465 3641580 - 116 157144296 CKO_03910 - 5S ribosomal RNA
3644877 3644949 - 73 157144296 CKO_03912 - 04</sub> Glu tRNA
3646020 3646551 - 532 157144296 CKO_03913 - small subunit ribosomal RNA
3672983 3673344 + 362 157144296 CKO_03943 - tmRNA
3757395 3757469 + 75 157144296 CKO_04037 - SraD RNA
3760367 3760440 - 74 157144296 CKO_04042 - 11</sub> Arg tRNA
3760637 3760710 - 74 157144296 CKO_04043 - 11</sub> Arg tRNA
3760907 3760980 - 74 157144296 CKO_04044 - 11</sub> Arg tRNA
3761046 3761119 - 74 157144296 CKO_04045 - 11</sub> Arg tRNA
3761126 3761215 - 90 157144296 CKO_04046 - 08</sub> Ser tRNA
3858998 3859356 - 359 157144296 CKO_04148 - CsrB/RsmB RNA family
3877663 3877809 + 147 157144296 CKO_04172 - GcvB RNA
3882291 3882364 + 74 157144296 CKO_04179 - 16</sub> Met tRNA
3882519 3882592 + 74 157144296 CKO_04180 - 16</sub> Met tRNA
3882747 3882820 + 74 157144296 CKO_04181 - 16</sub> Met tRNA
3911803 3911889 - 87 157144296 CKO_04209 - SraE/RygA/RygB family RNA
3912005 3912088 - 84 157144296 CKO_04210 - SraE/RygA/RygB family RNA
3940652 3940722 - 71 157144296 CKO_04248 - 01</sub> Gly tRNA
3964871 3965054 + 184 157144296 CKO_04276 - 6S / SsrS RNA
4023512 4023584 + 73 157144296 CKO_04343 - 17</sub> Phe tRNA
4133781 4133853 + 73 157144296 CKO_04468 - 16</sub> Met tRNA
4181245 4181547 - 303 157144296 CKO_04520 - RNA component of RNase P
4216423 4216593 + 171 157144296 CKO_04563 - SraG RNA
4223487 4223560 - 74 157144296 CKO_04572 - 16</sub> Met tRNA
4225459 4225542 - 84 157144296 CKO_04575 - 15</sub> Leu tRNA
4253942 4254049 + 108 157144296 CKO_04613 - SraH RNA
4321864 4321979 - 116 157144296 CKO_04685 - 5S ribosomal RNA
4322023 4322095 - 73 157144296 CKO_04686 - 12</sub> Thr tRNA
4322110 4322225 - 116 157144296 CKO_04687 - 5S ribosomal RNA
4325415 4325487 - 73 157144296 CKO_04689 - 04</sub> Glu tRNA
4326558 4327089 - 532 157144296 CKO_04690 - small subunit ribosomal RNA
4466850 4466932 - 83 157144296 CKO_04860 - RyhB RNA
4587553 4587626 - 74 157144296 CKO_04995 - 03</sub> Pro tRNA