ФЭНДОМ


   LOCUS       NC_009778            4368373 bp    DNA     circular BCT 07-SEP-2007
   DEFINITION  Enterobacter sakazakii ATCC BAA-894, complete genome.
   ACCESSION   NC_009778
   VERSION     NC_009778.1  GI:156932229
   KEYWORDS    .
   SOURCE      Enterobacter sakazakii ATCC BAA-894
     ORGANISM  Enterobacter sakazakii ATCC BAA-894
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Cronobacter.
   REFERENCE   1  (bases 1 to 4368373)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (06-SEP-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   2  (bases 1 to 4368373)
     AUTHORS   McClelland,M., Sanderson,E.K., Porwollik,S., Spieth,J.,
               Clifton,W.S., Latreille,P., Courtney,L., Pepin,K., Bhonagiri,V.,
               Nash,W., Johnson,M., Thiruvilangam,P. and Wilson,R.
     CONSRTM   The Enterobacter sakazakii Genome Sequencing Project
     TITLE     Direct Submission
     JOURNAL   Submitted (25-JUL-2007) Genetics, Genome Sequencing Center, 4444
               Forest Park Parkway, St. Louis, MO 63108, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000783.
               E. sakazakii--Enterobacter sakazakii is rarely encountered in
               clinical specimens, and is more prevalent in the environment and in
               food. However, Enterobacter sakazakii is strongly implicated in
               food borne diseases causing severe meningitis or enteritis,
               especially in neonates and infants (Nazarowec-White and Farber, Int
               J FoodMicrobiol. 1997 Feb;34(2):103-13).
               
               The strain of Enterobacter sakazakii being sequenced was isolated
               from powdered milk formula fed to a hospitalized neonate that
               developed an infection (Centers for Disease Control and
               Prevention). It is available from the American Type Culture
               Collection as ATCC BAA-894 or from the Salmonella Genetic Stock
               Centre as SGSC4695. The genome was sequenced to 8X coverage, using
               plasmid and fosmid libraries, and was finished to an error rate of
               less than 1 per 10,000 bases. Automated annotation was performed
               and manual annotation will continue in the labs of Michael
               McClelland and Kenneth Sanderson. The National Institute of Allergy
               and Infectious Diseases (NIAID), National Institutes of Health
               (NIH) has funded this project.
               
               Coding sequences below are predicted using GeneMark v3.3 and
               Glimmer2  v2.13. Intergenic regions not spanned by GeneMark and
               Glimmer2 were blasted against NCBI's non-redundant (NR) database
               and predictions generated based on protein alignments. RNA genes
               were determined  using tRNAscan-SE 1.23 or Rfam v8.0. This sequence
               was finished as follows unless otherwise noted: all regions were
               double stranded, sequenced with an alternate chemistries or covered
               by high quality data(i.e., phred quality >=30);an attempt was made
               to resolve all sequencing problems, such as compressions and
               repeats; all regionswere covered by sequence from more than one m13
               subclone.
               COMPLETENESS: full length.


Расположение РНК Править

Начало Конец Направление Длина PID Ген COG Комментарий
24930 25461 + 532 156932229 ESA_00047 - small subunit ribosomal RNA
26515 26588 + 74 156932229 ESA_00048 - 14</sub> Ile tRNA
26703 26775 + 73 156932229 ESA_00049 - 02</sub> Ala tRNA
29940 30055 + 116 156932229 ESA_00051 - 5S ribosomal RNA
133135 133207 - 73 156932229 ESA_00146 - 17</sub> Phe tRNA
157866 157938 + 73 156932229 ESA_00172 - 01</sub> Gly tRNA
157976 158048 + 73 156932229 ESA_00173 - 01</sub> Gly tRNA
158085 158157 + 73 156932229 ESA_00174 - 01</sub> Gly tRNA
287435 287507 - 73 156932229 ESA_00311 - 17</sub> Phe tRNA
324788 324860 - 73 156932229 ESA_00352 - 16</sub> Met tRNA
395295 395478 - 184 156932229 ESA_00417 - 6S / SsrS RNA
419832 419902 + 71 156932229 ESA_00444 - 01</sub> Gly tRNA
443904 443986 + 83 156932229 ESA_00471 - SraE/RygA/RygB family RNA
472501 472574 - 74 156932229 ESA_00495 - 16</sub> Met tRNA
472619 472692 - 74 156932229 ESA_00496 - 16</sub> Met tRNA
477054 477199 - 146 156932229 ESA_00502 - GcvB RNA
487253 487598 + 346 156932229 ESA_00513 - CsrB/RsmB RNA family
545730 545819 + 90 156932229 ESA_00572 - 08</sub> Ser tRNA
545827 545900 + 74 156932229 ESA_00573 - 11</sub> Arg tRNA
545966 546039 + 74 156932229 ESA_00574 - 11</sub> Arg tRNA
546235 546308 + 74 156932229 ESA_00575 - 11</sub> Arg tRNA
546374 546447 + 74 156932229 ESA_00576 - 11</sub> Arg tRNA
549429 549503 - 75 156932229 ESA_00580 - SraD RNA
602001 602363 - 363 156932229 ESA_00631 - tmRNA
629793 630324 + 532 156932229 ESA_00663 - small subunit ribosomal RNA
631378 631451 + 74 156932229 ESA_00664 - 14</sub> Ile tRNA
631488 631560 + 73 156932229 ESA_00665 - 02</sub> Ala tRNA
634728 634843 + 116 156932229 ESA_00668 - 5S ribosomal RNA
658250 658415 + 166 156932229 ESA_00692 - rncO
672564 672711 - 148 156932229 ESA_00705 - tke1 RNA
810614 810686 - 73 156932229 ESA_00837 - 10</sub> Lys tRNA
810694 810766 - 73 156932229 ESA_00838 - 13</sub> Val tRNA
810818 810890 - 73 156932229 ESA_00839 - 13</sub> Val tRNA
810934 811006 - 73 156932229 ESA_00840 - 13</sub> Val tRNA
813681 813753 + 73 156932229 ESA_00844 - 02</sub> Ala tRNA
813801 813873 + 73 156932229 ESA_00845 - 02</sub> Ala tRNA
837242 837313 - 72 156932229 ESA_00866 - 11</sub> Arg tRNA
948230 948323 - 94 156932229 ESA_00973 - MicF RNA
1009913 1009986 - 74 156932229 ESA_01047 - 03</sub> Pro tRNA
1099136 1099221 - 86 156932229 ESA_01137 - RyeE RNA
1181722 1181794 - 73 156932229 ESA_01213 - 07</sub> Asn tRNA
1190130 1190202 - 73 156932229 ESA_01219 - 07</sub> Asn tRNA
1194646 1194718 - 73 156932229 ESA_01223 - 07</sub> Asn tRNA
1198640 1198712 - 73 156932229 ESA_01227 - 07</sub> Asn tRNA
1199705 1199791 + 87 156932229 ESA_01229 - 08</sub> Ser tRNA
1272530 1272602 + 73 156932229 ESA_01312 - 01</sub> Gly tRNA
1272745 1272828 + 84 156932229 ESA_01313 - 15</sub> Leu tRNA
1356623 1356873 - 251 156932229 ESA_01403 - SraC/RyeA RNA
1356732 1356831 + 100 156932229 ESA_01402 - RyeB RNA
1477126 1477207 - 82 156932229 ESA_01526 - 18</sub> Tyr tRNA
1477244 1477413 - 170 156932229 ESA_01527 - RtT RNA
1477422 1477503 - 82 156932229 ESA_01528 - 18</sub> Tyr tRNA
1477532 1477709 - 178 156932229 ESA_01529 - RtT RNA
1963902 1963975 + 74 156932229 ESA_02029 - 13</sub> Val tRNA
1963988 1964061 + 74 156932229 ESA_02030 - 13</sub> Val tRNA
2048085 2048192 + 108 156932229 ESA_02099 - RprA RNA
2279690 2279774 + 85 156932229 ESA_02346 - 08</sub> Ser tRNA
2282784 2282868 + 85 156932229 ESA_02348 - 08</sub> Ser tRNA
2311040 2311124 - 85 156932229 ESA_02377 - 08</sub> Ser tRNA
2437466 2437544 + 79 156932229 ESA_02489 - RybB RNA
2550071 2550143 - 73 156932229 ESA_02597 - 10</sub> Lys tRNA
2550243 2550315 - 73 156932229 ESA_02598 - 10</sub> Lys tRNA
2550397 2550469 - 73 156932229 ESA_02599 - 10</sub> Lys tRNA
2550476 2550548 - 73 156932229 ESA_02600 - 13</sub> Val tRNA
2550659 2550731 - 73 156932229 ESA_02601 - 10</sub> Lys tRNA
2622017 2622090 + 74 156932229 ESA_02666 - 16</sub> Met tRNA
2622102 2622183 + 82 156932229 ESA_02667 - 15</sub> Leu tRNA
2622209 2622280 + 72 156932229 ESA_02668 - 05</sub> Gln tRNA
2622320 2622391 + 72 156932229 ESA_02669 - 05</sub> Gln tRNA
2622425 2622498 + 74 156932229 ESA_02670 - 16</sub> Met tRNA
2622564 2622635 + 72 156932229 ESA_02672 - 05</sub> Gln tRNA
2622730 2622801 + 72 156932229 ESA_02673 - 05</sub> Gln tRNA
2631290 2631451 + 162 156932229 ESA_02681 - SroC RNA
2701466 2701539 - 74 156932229 ESA_02755 - 11</sub> Arg tRNA
2728530 2728613 - 84 156932229 ESA_02782 - SroB RNA
2776825 2776922 - 98 156932229 ESA_02828 - bacterial signal recognition particle RNA
3025398 3025470 - 73 156932229 ESA_03108 - 12</sub> Thr tRNA
3040743 3040816 - 74 156932229 ESA_03123 - 06</sub> Asp tRNA
3048943 3049016 - 74 156932229 ESA_03133 - 06</sub> Asp tRNA
3049071 3049186 - 116 156932229 ESA_03134 - 5S ribosomal RNA
3052387 3052459 - 73 156932229 ESA_03136 - 04</sub> Glu tRNA
3053523 3054054 - 532 156932229 ESA_03137 - small subunit ribosomal RNA
3089214 3089341 - 128 156932229 ESA_03174 - t44 RNA
3322405 3322487 + 83 156932229 ESA_03382 - 15</sub> Leu tRNA
3322523 3322605 + 83 156932229 ESA_03383 - 15</sub> Leu tRNA
3322639 3322721 + 83 156932229 ESA_03384 - 15</sub> Leu tRNA
3378091 3378172 - 82 156932229 ESA_03435 - 15</sub> Leu tRNA
3478054 3478356 - 303 156932229 ESA_03534 - RNA component of RNase P
3497697 3497865 + 169 156932229 ESA_03558 - SraG RNA
3504696 3504769 - 74 156932229 ESA_03564 - 16</sub> Met tRNA
3504832 3504915 - 84 156932229 ESA_03565 - 15</sub> Leu tRNA
3534272 3534387 + 116 156932229 ESA_03602 - SraH RNA
3604119 3604234 - 116 156932229 ESA_03663 - 5S ribosomal RNA
3604275 3604347 - 73 156932229 ESA_03664 - 12</sub> Thr tRNA
3604362 3604477 - 116 156932229 ESA_03665 - 5S ribosomal RNA
3607678 3607750 - 73 156932229 ESA_03668 - 04</sub> Glu tRNA
3608814 3609345 - 532 156932229 ESA_03669 - small subunit ribosomal RNA
3640439 3640511 - 73 156932229 ESA_03700 - 12</sub> Thr tRNA
3640521 3640592 - 72 156932229 ESA_03701 - 01</sub> Gly tRNA
3640704 3640785 - 82 156932229 ESA_03702 - 18</sub> Tyr tRNA
3640798 3640870 - 73 156932229 ESA_03703 - 12</sub> Thr tRNA
3644581 3644696 - 116 156932229 ESA_03706 - 5S ribosomal RNA
3647894 3647966 - 73 156932229 ESA_03708 - 04</sub> Glu tRNA
3649030 3649561 - 532 156932229 ESA_03709 - small subunit ribosomal RNA
3698667 3698837 - 171 156932229 ESA_03757 - SraJ RNA
3705297 3705370 - 74 156932229 ESA_03760 - 03</sub> Pro tRNA
3705410 3705492 - 83 156932229 ESA_03761 - 15</sub> Leu tRNA
3705518 3705590 - 73 156932229 ESA_03762 - 09</sub> His tRNA
3705648 3705721 - 74 156932229 ESA_03763 - 11</sub> Arg tRNA
3738718 3738790 - 73 156932229 ESA_03792 - 20</sub> Trp tRNA
3738802 3738875 - 74 156932229 ESA_03793 - 06</sub> Asp tRNA
3738930 3739045 - 116 156932229 ESA_03794 - 5S ribosomal RNA
3742210 3742282 - 73 156932229 ESA_03796 - 02</sub> Ala tRNA
3742319 3742392 - 74 156932229 ESA_03797 - 14</sub> Ile tRNA
3743446 3743977 - 532 156932229 ESA_03798 - small subunit ribosomal RNA
3976772 3977303 + 532 156932229 ESA_04030 - small subunit ribosomal RNA
3978367 3978439 + 73 156932229 ESA_04031 - 04</sub> Glu tRNA
3978644 3981547 + 2904 156932229 ESA_04408 - 23S ribosomal RNA
3981639 3981754 + 116 156932229 ESA_04032 - 5S ribosomal RNA
3989372 3989490 + 119 156932229 ESA_04041 - Spot 42 RNA
3990443 3990707 + 265 156932229 ESA_04043 - CsrC RNA family
4145660 4145733 + 74 156932229 ESA_04189 - 03</sub> Pro tRNA
4261429 4261510 + 82 156932229 ESA_04298 - RyhB RNA

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