ФЭНДОМ


   LOCUS       NC_009708            4723306 bp    DNA     circular BCT 19-SEP-2007
   DEFINITION  Yersinia pseudotuberculosis IP 31758, complete genome.
   ACCESSION   NC_009708
   VERSION     NC_009708.1  GI:153946813
   KEYWORDS    .
   SOURCE      Yersinia pseudotuberculosis IP 31758
     ORGANISM  Yersinia pseudotuberculosis IP 31758
               Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
               Enterobacteriaceae; Yersinia.
   REFERENCE   1  (bases 1 to 4723306)
     AUTHORS   Eppinger,M., Rosovitz,M.J., Fricke,W.F., Rasko,D.A., Kokorina,G.,
               Fayolle,C., Lindler,L.E., Carniel,E. and Ravel,J.
     TITLE     The complete genome sequence of Yersinia pseudotuberculosis
               IP31758, the causative agent of Far East scarlet-like fever
     JOURNAL   PLoS Genet. 3 (8), E142 (2007)
      PUBMED   17784789
   REFERENCE   2  (bases 1 to 4723306)
     CONSRTM   NCBI Genome Project
     TITLE     Direct Submission
     JOURNAL   Submitted (26-JUL-2007) National Center for Biotechnology
               Information, NIH, Bethesda, MD 20894, USA
   REFERENCE   3  (bases 1 to 4723306)
     AUTHORS   Eppinger,M., Rosovitz,M., Fricke,W.W., Rasko,D.A., Lindler,L.E.,
               Carniel,E. and Ravel,J.
     TITLE     Direct Submission
     JOURNAL   Submitted (05-JUN-2007) Microbial Genomics and Pathogen Functional
               Genomic Resource Center, J. Craig Venter Institute, 9712 Medical
               Center Drive, Rockville, MD 20850, USA
   COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
               NCBI review. The reference sequence was derived from CP000720.
               Inquiries for DNA can be made to Elizabeth Carniel
               (carniel2@pasteur.fr).
               COMPLETENESS: full length.


Расположение РНК Править

Начало Конец Направление Длина PID Ген COG Комментарий
12000 13542 + 1543 153946813 YpsIP31758_4189 - 16S ribosomal RNA
13678 13755 + 78 153946813 YpsIP31758_4190 - 04</sub> Glu tRNA
14007 16913 + 2907 153946813 YpsIP31758_4191 - 23S ribosomal RNA
17021 17140 + 120 153946813 YpsIP31758_4192 - 5S ribosomal RNA
25613 25730 + 118 153946813 YpsIP31758_4297 - Spot 42 RNA
26868 27121 + 254 153946813 YpsIP31758_4298 - CsrC RNA family
159777 161319 + 1543 153946813 YpsIP31758_4193 - 16S ribosomal RNA
161455 161532 + 78 153946813 YpsIP31758_4194 - 04</sub> Glu tRNA
161784 164690 + 2907 153946813 YpsIP31758_4195 - 23S ribosomal RNA
164798 164917 + 120 153946813 YpsIP31758_4196 - 5S ribosomal RNA
165040 165118 + 79 153946813 YpsIP31758_4197 - 06</sub> Asp tRNA
165125 165202 + 78 153946813 YpsIP31758_4198 - 20</sub> Trp tRNA
221179 221255 + 77 153946813 YpsIP31758_4199 - 11</sub> Arg tRNA
221338 221415 + 78 153946813 YpsIP31758_4200 - 09</sub> His tRNA
221430 221518 + 89 153946813 YpsIP31758_4201 - 15</sub> Leu tRNA
221592 221670 + 79 153946813 YpsIP31758_4202 - 03</sub> Pro tRNA
322792 324334 + 1543 153946813 YpsIP31758_4203 - 16S ribosomal RNA
324436 324514 + 79 153946813 YpsIP31758_4204 - 14</sub> Ile tRNA
324564 324641 + 78 153946813 YpsIP31758_4205 - 02</sub> Ala tRNA
324859 327765 + 2907 153946813 YpsIP31758_4206 - 23S ribosomal RNA
327875 327990 + 116 153946813 YpsIP31758_4300 - 5S ribosomal RNA
328005 328082 + 78 153946813 YpsIP31758_4207 - 12</sub> Thr tRNA
328120 328239 + 120 153946813 YpsIP31758_4208 - 5S ribosomal RNA
547912 548024 - 113 153946813 YpsIP31758_4301 - SraH RNA
554644 554946 + 303 153946813 YpsIP31758_4302 - RNase P class A
649301 649379 - 79 153946813 YpsIP31758_4209 - 16</sub> Met tRNA
977582 977659 - 78 153946813 YpsIP31758_4210 - 17</sub> Phe tRNA
1037218 1037399 - 182 153946813 YpsIP31758_4304 - 6S / SsrS RNA
1068026 1068099 + 74 153946813 YpsIP31758_4211 - 01</sub> Gly tRNA
1165923 1166017 + 95 153946813 YpsIP31758_4305 - sraE/rygA/rygB family RNA
1195603 1195679 - 77 153946813 YpsIP31758_4212 - 16</sub> Met tRNA
1195740 1195816 - 77 153946813 YpsIP31758_4213 - 16</sub> Met tRNA
1195984 1196060 - 77 153946813 YpsIP31758_4214 - 16</sub> Met tRNA
1200711 1200817 - 107 153946813 YpsIP31758_4306 - gcvB RNA
1208063 1208385 + 323 153946813 YpsIP31758_4307 - CsrB/RsmB RNA family
1215459 1215665 + 207 153946813 YpsIP31758_4308 - t44 RNA
1247810 1249364 + 1555 153946813 YpsIP31758_4215 - 16S ribosomal RNA
1249488 1249565 + 78 153946813 YpsIP31758_4216 - 04</sub> Glu tRNA
1249817 1252723 + 2907 153946813 YpsIP31758_4217 - 23S ribosomal RNA
1252831 1252950 + 120 153946813 YpsIP31758_4218 - 5S ribosomal RNA
1253073 1253151 + 79 153946813 YpsIP31758_4219 - 06</sub> Asp tRNA
1260509 1260587 + 79 153946813 YpsIP31758_4220 - 06</sub> Asp tRNA
1353391 1353555 - 165 153946813 YpsIP31758_4309 - tke1 RNA
1418759 1418844 - 86 153946813 YpsIP31758_4311 - RyeE RNA
1550997 1551074 - 78 153946813 YpsIP31758_4221 - 02</sub> Ala tRNA
1551150 1551227 - 78 153946813 YpsIP31758_4222 - 02</sub> Ala tRNA
1553148 1553223 + 76 153946813 YpsIP31758_4223 - 13</sub> Val tRNA
1553260 1553335 + 76 153946813 YpsIP31758_4224 - 13</sub> Val tRNA
1553379 1553456 + 78 153946813 YpsIP31758_4225 - 13</sub> Val tRNA
1553654 1553731 + 78 153946813 YpsIP31758_4226 - 10</sub> Lys tRNA
1622954 1623028 + 75 153946813 YpsIP31758_4227 - 11</sub> Arg tRNA
2008789 2008897 - 109 153946813 YpsIP31758_4312 - rprA RNA
2025240 2025318 - 79 153946813 YpsIP31758_4228 - 13</sub> Val tRNA
2025467 2025545 - 79 153946813 YpsIP31758_4229 - 13</sub> Val tRNA
2025603 2025681 - 79 153946813 YpsIP31758_4230 - 13</sub> Val tRNA
2063571 2063671 + 101 153946813 YpsIP31758_4313 - RyhB RNA
2275524 2275610 + 87 153946813 YpsIP31758_4231 - 18</sub> Tyr tRNA
2275674 2275760 + 87 153946813 YpsIP31758_4232 - 18</sub> Tyr tRNA
2366861 2366952 + 92 153946813 YpsIP31758_4233 - 08</sub> Ser tRNA
2374510 2374601 + 92 153946813 YpsIP31758_4234 - 08</sub> Ser tRNA
2494338 2494415 + 78 153946813 YpsIP31758_4235 - 07</sub> Asn tRNA
2557109 2557194 - 86 153946813 YpsIP31758_4236 - 15</sub> Leu tRNA
2557204 2557279 - 76 153946813 YpsIP31758_4237 - 19</sub> Cys tRNA
2557331 2557406 - 76 153946813 YpsIP31758_4238 - 01</sub> Gly tRNA
2563856 2563933 - 78 153946813 YpsIP31758_4239 - 10</sub> Lys tRNA
2639150 2639399 + 250 153946813 YpsIP31758_4314 - sraC/ryeA RNA
2639187 2639288 - 102 153946813 YpsIP31758_4315 - RyeB RNA
2693239 2693316 + 78 153946813 YpsIP31758_4240 - 07</sub> Asn tRNA
2704257 2704334 + 78 153946813 YpsIP31758_4241 - 07</sub> Asn tRNA
2861232 2861321 - 90 153946813 YpsIP31758_4242 - 08</sub> Ser tRNA
2873877 2873946 + 70 153946813 YpsIP31758_4316 - RNA-OUT
3004582 3004662 + 81 153946813 YpsIP31758_4317 - rybB RNA
3079302 3079380 + 79 153946813 YpsIP31758_4243 - 03</sub> Pro tRNA
3111104 3111179 - 76 153946813 YpsIP31758_4244 - 12</sub> Thr tRNA
3111184 3111273 - 90 153946813 YpsIP31758_4245 - 08</sub> Ser tRNA
3114232 3114318 + 87 153946813 YpsIP31758_4318 - micF RNA
3235183 3235253 - 71 153946813 YpsIP31758_4246 -
3235350 3235420 - 71 153946813 YpsIP31758_4247 - 10</sub> Lys tRNA
3235517 3235587 - 71 153946813 YpsIP31758_4248 - 10</sub> Lys tRNA
3235684 3235754 - 71 153946813 YpsIP31758_4249 -
3235782 3235857 - 76 153946813 YpsIP31758_4250 - 10</sub> Lys tRNA
3235885 3235960 - 76 153946813 YpsIP31758_4251 - 10</sub> Lys tRNA
3235988 3236063 - 76 153946813 YpsIP31758_4252 - 10</sub> Lys tRNA
3236090 3236167 - 78 153946813 YpsIP31758_4253 - 10</sub> Lys tRNA
3263983 3264346 + 364 153946813 YpsIP31758_4254 - 10Sa RNA (tmRNA)
3286365 3286443 + 79 153946813 YpsIP31758_4255 - 16</sub> Met tRNA
3286449 3286535 + 87 153946813 YpsIP31758_4256 - 15</sub> Leu tRNA
3286564 3286638 + 75 153946813 YpsIP31758_4257 - 05</sub> Gln tRNA
3286721 3286797 + 77 153946813 YpsIP31758_4258 - 05</sub> Gln tRNA
3286828 3286906 + 79 153946813 YpsIP31758_4259 - 16</sub> Met tRNA
3286910 3286986 + 77 153946813 YpsIP31758_4260 - 05</sub> Gln tRNA
3391250 3391328 - 79 153946813 YpsIP31758_4261 - 11</sub> Arg tRNA
3409729 3409812 - 84 153946813 YpsIP31758_4321 - sroB RNA
3460689 3460788 - 100 153946813 YpsIP31758_4322 - bacterial signal recognition particle RNA
3612672 3612791 - 120 153946813 YpsIP31758_4262 - 5S ribosomal RNA
3612899 3615805 - 2907 153946813 YpsIP31758_4263 - 23S ribosomal RNA
3616023 3616100 - 78 153946813 YpsIP31758_4264 - 02</sub> Ala tRNA
3616150 3616228 - 79 153946813 YpsIP31758_4265 - 14</sub> Ile tRNA
3616318 3617872 - 1555 153946813 YpsIP31758_4266 - 16S ribosomal RNA
3639626 3639700 + 75 153946813 YpsIP31758_4323 - sraD RNA
3642656 3642727 - 72 153946813 YpsIP31758_4267 -
3642806 3642884 - 79 153946813 YpsIP31758_4268 - 11</sub> Arg tRNA
3642962 3643040 - 79 153946813 YpsIP31758_4269 - 11</sub> Arg tRNA
3643096 3643174 - 79 153946813 YpsIP31758_4270 - 11</sub> Arg tRNA
3643181 3643275 - 95 153946813 YpsIP31758_4271 - 08</sub> Ser tRNA
3958156 3958242 + 87 153946813 YpsIP31758_4272 - 15</sub> Leu tRNA
3958338 3958426 + 89 153946813 YpsIP31758_4273 - 15</sub> Leu tRNA
3958539 3958625 + 87 153946813 YpsIP31758_4274 - 15</sub> Leu tRNA
4000577 4000663 - 87 153946813 YpsIP31758_4275 - 15</sub> Leu tRNA
4057624 4057805 + 182 153946813 YpsIP31758_4325 - SraG RNA
4058035 4058153 - 119 153946813 YpsIP31758_4326 - Ribosomal S15 leader
4064543 4064619 - 77 153946813 YpsIP31758_4276 - 16</sub> Met tRNA
4064679 4064767 - 89 153946813 YpsIP31758_4277 - 15</sub> Leu tRNA
4126771 4126846 - 76 153946813 YpsIP31758_4278 - 01</sub> Gly tRNA
4126914 4126989 - 76 153946813 YpsIP31758_4279 - 01</sub> Gly tRNA
4127080 4127157 - 78 153946813 YpsIP31758_4280 - 01</sub> Gly tRNA
4157183 4157260 + 78 153946813 YpsIP31758_4281 - 17</sub> Phe tRNA
4323713 4323832 - 120 153946813 YpsIP31758_4282 - 5S ribosomal RNA
4323940 4326846 - 2907 153946813 YpsIP31758_4283 - 23S ribosomal RNA
4327097 4327174 - 78 153946813 YpsIP31758_4284 - 04</sub> Glu tRNA
4327298 4328852 - 1555 153946813 YpsIP31758_4285 - 16S ribosomal RNA
4359497 4359574 - 78 153946813 YpsIP31758_4286 - 12</sub> Thr tRNA
4359580 4359654 - 75 153946813 YpsIP31758_4287 - 01</sub> Gly tRNA
4359804 4359888 - 85 153946813 YpsIP31758_4288 - 18</sub> Tyr tRNA
4359906 4359983 - 78 153946813 YpsIP31758_4289 - 12</sub> Thr tRNA
4365284 4365403 - 120 153946813 YpsIP31758_4290 - 5S ribosomal RNA
4365511 4368417 - 2907 153946813 YpsIP31758_4291 - 23S ribosomal RNA
4368635 4368712 - 78 153946813 YpsIP31758_4292 - 02</sub> Ala tRNA
4368762 4368840 - 79 153946813 YpsIP31758_4293 - 14</sub> Ile tRNA
4368930 4370484 - 1555 153946813 YpsIP31758_4294 - 16S ribosomal RNA
4530557 4530660 - 104 153946813 YpsIP31758_4329 - RyhB RNA
4597616 4597694 - 79 153946813 YpsIP31758_4295 - 03</sub> Pro tRNA
4621124 4621218 - 95 153946813 YpsIP31758_4296 - Sec tRNA