LOCUS NC_008528 1780517 bp DNA circular BCT 31-OCT-2006
DEFINITION Oenococcus oeni PSU-1, complete genome.
ACCESSION NC_008528
VERSION NC_008528.1 GI:116490126
KEYWORDS .
SOURCE Oenococcus oeni PSU-1
ORGANISM Oenococcus oeni PSU-1
Bacteria; Firmicutes; Lactobacillales; Oenococcus.
REFERENCE 1 (bases 1 to 1780517)
AUTHORS Makarova,K., Slesarev,A., Wolf,Y., Sorokin,A., Mirkin,B.,
Koonin,E., Pavolv,A., Pavlova,N., Karamychev,V., Polouchine,N.,
Shakhova,V., Grigoriev,I., Lou,Y., Rohksar,D., Lucas,S., Huang,K.,
Goldstein,D.M., Hawkins,T., Plengvidhya,V., Welker,D., Hughes,J.,
Goh,Y., Benson,A., Baldwin,K., Lee,J.-H., Diaz-Muniz,I., Dosti,B.,
Smeianov,V., Wechter,W., Barabote,R., Lorca,G., Altermann,E.,
Barrangou,R., Ganesan,B., Xie,Y., Rawsthorne,H., Tamir,D.,
Parker,C., Breidt,F., Broadbent,J., Hutkins,R., O'Sulllivan,D.,
Steele,J., Unlu,G., Saier,M., Klaenhammer,T., Richardson,P.,
Kozyavkin,S., Weimer,B. and Mills,D.
TITLE Comparative genomics of the lactic acid bacteria
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 103 (42), 15611-15616 (2006)
PUBMED 17030793
REFERENCE 2 (bases 1 to 1780517)
AUTHORS .
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (23-OCT-2006) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1780517)
AUTHORS Lucas,S., Copeland,A., Detter,J.C., Glavina del Rio,T., Pitluck,S.,
Grigoriev,I., Rokhsar,D., Slesarev,A., Pavlov,A., Pavlova,N.,
Karamychev,V., Polouchine,N., Shakhova,V., Kozyavkin,S.,
Makarova,K., Koonin,E., Mills,D.A. and Richardson,P.
CONSRTM US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria
Genome Consortium and Fidelity Systems Inc.
TITLE Direct Submission
JOURNAL Submitted (22-MAY-2006) US DOE Joint Genome Institute, 2800
Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from CP000411.
URL -- http://www.jgi.doe.gov
JGI Project ID: 2662182
Source DNA and bacteria available from David Mills
(damills@ucdavis.edu)
Contacts: David Mills (damills@ucdavis.edu)
Paul Richardson (microbes@cuba.jgi-psf.org)
Annotation done by Kira Makarova and Eugene Koonin
Finishing done by Fidelity Systems Inc. (Gaithersburg)
URL -- http://www.fidelitysystems.com Project Information
available at: http://genome.jgi-psf.org/mic_home.html
The JGI and collaborators endorse the principles for the
distribution and use of large scale sequencing data adopted by the
larger genome sequencing community and urge users of this data to
follow them.
(http://www.genome.gov/page.cfm?pageID=10506376).
COMPLETENESS: full length.
Расположение РНК[]
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 97797 | 97869 | - | 73 | 116490126 | OEOE_t0104 | - | 10 Lys tRNA |
| 184055 | 184127 | + | 73 | 116490126 | OEOE_t0193 | - | 07 Asn tRNA |
| 184194 | 184266 | + | 73 | 116490126 | OEOE_t0194 | - | 12 Thr tRNA |
| 389125 | 389197 | - | 73 | 116490126 | OEOE_t0403 | - | 11 Arg tRNA |
| 393198 | 393270 | + | 73 | 116490126 | OEOE_t0409 | - | 11 Arg tRNA |
| 429554 | 429627 | - | 74 | 116490126 | OEOE_t0442 | - | 12 Thr tRNA |
| 431415 | 431499 | - | 85 | 116490126 | OEOE_t0445 | - | 15 Leu tRNA |
| 489667 | 490016 | - | 350 | 116490126 | OEOE_s0505 | - | tmRNA |
| 490141 | 490212 | + | 72 | 116490126 | OEOE_t0506 | - | 04 Glu tRNA |
| 512229 | 512316 | + | 88 | 116490126 | OEOE_t0530 | - | 08 Ser tRNA |
| 616309 | 617875 | + | 1567 | 116490126 | OEOE_r0653 | - | 16S ribosomal RNA |
| 617973 | 618045 | + | 73 | 116490126 | OEOE_t0654 | - | 02 Ala tRNA |
| 618261 | 621148 | + | 2888 | 116490126 | OEOE_r0655 | - | 23S ribosomal RNA |
| 621245 | 621280 | + | 36 | 116490126 | OEOE_r0656 | - | 5S ribosomal RNA |
| 646054 | 646130 | + | 77 | 116490126 | OEOE_t0685 | - | 10 Lys tRNA |
| 657699 | 657773 | + | 75 | 116490126 | OEOE_t0698 | - | 04 Glu tRNA |
| 729898 | 729969 | - | 72 | 116490126 | OEOE_t0781 | - | 01 Gly tRNA |
| 763895 | 763965 | + | 71 | 116490126 | OEOE_t0816 | - | 19 Cys tRNA |
| 798601 | 798684 | + | 84 | 116490126 | OEOE_t0851 | - | 15 Leu tRNA |
| 864352 | 864425 | + | 74 | 116490126 | OEOE_t0921 | - | 20 Trp tRNA |
| 864428 | 864501 | + | 74 | 116490126 | OEOE_t0922 | - | 09 His tRNA |
| 864540 | 864623 | + | 84 | 116490126 | OEOE_t0923 | - | 15 Leu tRNA |
| 894078 | 894151 | + | 74 | 116490126 | OEOE_t0955 | - | 11 Arg tRNA |
| 901908 | 901999 | - | 92 | 116490126 | OEOE_t0967 | - | 08 Ser tRNA |
| 1021190 | 1021513 | - | 324 | 116490126 | OEOE_r1091 | - | RNA_RNaseP_classB |
| 1146569 | 1146661 | - | 93 | 116490126 | OEOE_t1213 | - | 08 Ser tRNA |
| 1146741 | 1146814 | - | 74 | 116490126 | OEOE_t1214 | - | 14 Ile tRNA |
| 1146817 | 1146887 | - | 71 | 116490126 | OEOE_t1215 | - | 01 Gly tRNA |
| 1146908 | 1146980 | - | 73 | 116490126 | OEOE_t1216 | - | 17 Phe tRNA |
| 1147012 | 1147086 | - | 75 | 116490126 | OEOE_t1217 | - | 06 Asp tRNA |
| 1147143 | 1147216 | - | 74 | 116490126 | OEOE_t1218 | - | 16 Met tRNA |
| 1147243 | 1147332 | - | 90 | 116490126 | OEOE_t1219 | - | 08 Ser tRNA |
| 1147352 | 1147425 | - | 74 | 116490126 | OEOE_t1220 | - | 16 Met tRNA |
| 1147439 | 1147512 | - | 74 | 116490126 | OEOE_t1221 | - | 16 Met tRNA |
| 1147534 | 1147607 | - | 74 | 116490126 | OEOE_t1222 | - | 03 Pro tRNA |
| 1147672 | 1147745 | - | 74 | 116490126 | OEOE_t1223 | - | 11 Arg tRNA |
| 1147812 | 1147895 | - | 84 | 116490126 | OEOE_t1224 | - | 15 Leu tRNA |
| 1147917 | 1147988 | - | 72 | 116490126 | OEOE_t1225 | - | 01 Gly tRNA |
| 1148009 | 1148081 | - | 73 | 116490126 | OEOE_t1226 | - | 12 Thr tRNA |
| 1148120 | 1148192 | - | 73 | 116490126 | OEOE_t1227 | - | 13 Val tRNA |
| 1263744 | 1263827 | - | 84 | 116490126 | OEOE_t1359 | - | 15 Leu tRNA |
| 1273728 | 1273763 | - | 36 | 116490126 | OEOE_r1370 | - | 5S ribosomal RNA |
| 1273860 | 1276747 | - | 2888 | 116490126 | OEOE_r1371 | - | 23S ribosomal RNA |
| 1276963 | 1277035 | - | 73 | 116490126 | OEOE_t1372 | - | 02 Ala tRNA |
| 1277133 | 1278699 | - | 1567 | 116490126 | OEOE_r1373 | - | 16S ribosomal RNA |
| 1540760 | 1540832 | - | 73 | 116490126 | OEOE_t1622 | - | 05 Gln tRNA |
| 1556286 | 1556359 | - | 74 | 116490126 | OEOE_t1637 | - | 03 Pro tRNA |
| 1736852 | 1736924 | + | 73 | 116490126 | OEOE_t1816 | - | 02 Ala tRNA |
| 1764949 | 1765020 | - | 72 | 116490126 | OEOE_t1842 | - | 07 Asn tRNA |
| 1767500 | 1767582 | + | 83 | 116490126 | OEOE_t1846 | - | 18 Tyr tRNA |
| 1767630 | 1767702 | + | 73 | 116490126 | OEOE_t1847 | - | 05 Gln tRNA |