LOCUS NC_004578 6397126 bp DNA circular BCT 21-JUN-2007
DEFINITION Pseudomonas syringae pv. tomato str. DC3000, complete genome.
ACCESSION NC_004578
VERSION NC_004578.1 GI:28867243
KEYWORDS .
SOURCE Pseudomonas syringae pv. tomato str. DC3000
ORGANISM Pseudomonas syringae pv. tomato str. DC3000
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales;
Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 6397126)
AUTHORS Buell,C.R., Joardar,V., Lindeberg,M., Selengut,J., Paulsen,I.T.,
Gwinn,M.L., Dodson,R.J., Deboy,R.T., Durkin,A.S., Kolonay,J.F.,
Madupu,R., Daugherty,S., Brinkac,L., Beanan,M.J., Haft,D.H.,
Nelson,W.C., Davidsen,T., Zafar,N., Zhou,L., Liu,J., Yuan,Q.,
Khouri,H., Fedorova,N., Tran,B., Russell,D., Berry,K.,
Utterback,T., Van Aken,S.E., Feldblyum,T.V., D'Ascenzo,M.,
Deng,W.L., Ramos,A.R., Alfano,J.R., Cartinhour,S., Chatterjee,A.K.,
Delaney,T.P., Lazarowitz,S.G., Martin,G.B., Schneider,D.J.,
Tang,X., Bender,C.L., White,O., Fraser,C.M. and Collmer,A.
TITLE The complete genome sequence of the Arabidopsis and tomato pathogen
Pseudomonas syringae pv. tomato DC3000
JOURNAL Proc. Natl. Acad. Sci. U.S.A. 100 (18), 10181-10186 (2003)
PUBMED 12928499
REFERENCE 2 (bases 1 to 6397126)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (06-MAR-2003) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 6397126)
AUTHORS Buell,R., Joardar,V., Khouri,H., Fedorova,N., Tran,B., Russell,D.,
Berry,K., Utterback,T., Van Aken,S., Feldblyum,T., Gwinn,M.,
Dodson,R., DeBoy,R., Durkin,A., Kolonay,J., Madupu,R.,
Daugherty,S., Brinkac,L., Beanan,M., Haft,D., Selengut,J.,
Nelson,W., Davidsen,T., White,O., Fraser,C. and Collmer,A.
TITLE Direct Submission
JOURNAL Submitted (03-MAR-2003) The Institute for Genomic Research, 9712
Medical Center Dr, Rockville, MD 20850, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from AE016853.
COMPLETENESS: full length.
Расположение РНК[]
| Начало | Конец | Направление | Длина | PID | Ген | COG | Комментарий |
|---|---|---|---|---|---|---|---|
| 323982 | 324058 | - | 77 | 28867243 | PSPTO_t01 | - | 11 Arg tRNA |
| 586008 | 586084 | - | 77 | 28867243 | PSPTO_t02 | - | 16 Met tRNA |
| 666727 | 668265 | + | 1539 | 28867243 | PSPTO_r01 | - | 16S ribosomal RNA |
| 668362 | 668438 | + | 77 | 28867243 | PSPTO_t03 | - | 14 Ile tRNA |
| 668483 | 668558 | + | 76 | 28867243 | PSPTO_t04 | - | 02 Ala tRNA |
| 668802 | 671704 | + | 2903 | 28867243 | PSPTO_r02 | - | 23S ribosomal RNA |
| 671852 | 671971 | + | 120 | 28867243 | PSPTO_r03 | - | 5S ribosomal RNA |
| 674391 | 674475 | + | 85 | 28867243 | PSPTO_t05 | - | 18 Tyr tRNA |
| 674500 | 674573 | + | 74 | 28867243 | PSPTO_t06 | - | 01 Gly tRNA |
| 674600 | 674675 | + | 76 | 28867243 | PSPTO_t07 | - | 12 Thr tRNA |
| 674841 | 674916 | + | 76 | 28867243 | PSPTO_t08 | - | 20 Trp tRNA |
| 827541 | 829079 | + | 1539 | 28867243 | PSPTO_r04 | - | 16S ribosomal RNA |
| 829176 | 829252 | + | 77 | 28867243 | PSPTO_t09 | - | 14 Ile tRNA |
| 829297 | 829372 | + | 76 | 28867243 | PSPTO_t10 | - | 02 Ala tRNA |
| 829616 | 832518 | + | 2903 | 28867243 | PSPTO_r05 | - | 23S ribosomal RNA |
| 832666 | 832785 | + | 120 | 28867243 | PSPTO_r06 | - | 5S ribosomal RNA |
| 898785 | 898860 | + | 76 | 28867243 | PSPTO_t11 | - | 07 Asn tRNA |
| 898890 | 898966 | + | 77 | 28867243 | PSPTO_t12 | - | 03 Pro tRNA |
| 898972 | 899047 | + | 76 | 28867243 | PSPTO_t13 | - | 10 Lys tRNA |
| 899143 | 899219 | + | 77 | 28867243 | PSPTO_t14 | - | 03 Pro tRNA |
| 1072078 | 1073616 | + | 1539 | 28867243 | PSPTO_r07 | - | 16S ribosomal RNA |
| 1073713 | 1073789 | + | 77 | 28867243 | PSPTO_t15 | - | 14 Ile tRNA |
| 1073834 | 1073909 | + | 76 | 28867243 | PSPTO_t16 | - | 02 Ala tRNA |
| 1074153 | 1077055 | + | 2903 | 28867243 | PSPTO_r08 | - | 23S ribosomal RNA |
| 1077203 | 1077322 | + | 120 | 28867243 | PSPTO_r09 | - | 5S ribosomal RNA |
| 1162588 | 1162664 | - | 77 | 28867243 | PSPTO_t17 | - | 16 Met tRNA |
| 1219496 | 1219570 | - | 75 | 28867243 | PSPTO_t18 | - | 05 Gln tRNA |
| 1551777 | 1551861 | - | 85 | 28867243 | PSPTO_t19 | - | 15 Leu tRNA |
| 1956097 | 1956172 | + | 76 | 28867243 | PSPTO_t20 | - | 04 Glu tRNA |
| 1956175 | 1956250 | + | 76 | 28867243 | PSPTO_t21 | - | 01 Gly tRNA |
| 1956350 | 1956425 | + | 76 | 28867243 | PSPTO_t22 | - | 04 Glu tRNA |
| 1956430 | 1956505 | + | 76 | 28867243 | PSPTO_t23 | - | 01 Gly tRNA |
| 2014810 | 2014900 | + | 91 | 28867243 | PSPTO_t24 | - | 08 Ser tRNA |
| 2015010 | 2015086 | + | 77 | 28867243 | PSPTO_t25 | - | 11 Arg tRNA |
| 2015174 | 2015250 | + | 77 | 28867243 | PSPTO_t26 | - | 11 Arg tRNA |
| 2019304 | 2019380 | + | 77 | 28867243 | PSPTO_t27 | - | 11 Arg tRNA |
| 2266664 | 2266753 | - | 90 | 28867243 | PSPTO_t28 | - | 08 Ser tRNA |
| 2384751 | 2384826 | + | 76 | 28867243 | PSPTO_t29 | - | 02 Ala tRNA |
| 2384916 | 2384991 | + | 76 | 28867243 | PSPTO_t30 | - | 04 Glu tRNA |
| 2385044 | 2385119 | + | 76 | 28867243 | PSPTO_t31 | - | 02 Ala tRNA |
| 2385164 | 2385239 | + | 76 | 28867243 | PSPTO_t32 | - | 04 Glu tRNA |
| 2634736 | 2634812 | + | 77 | 28867243 | PSPTO_t33 | - | 03 Pro tRNA |
| 2988034 | 2988110 | + | 77 | 28867243 | PSPTO_t34 | - | 13 Val tRNA |
| 2988276 | 2988352 | + | 77 | 28867243 | PSPTO_t35 | - | 13 Val tRNA |
| 3346191 | 3346276 | + | 86 | 28867243 | PSPTO_t36 | - | 15 Leu tRNA |
| 3351545 | 3351618 | - | 74 | 28867243 | PSPTO_t37 | - | 19 Cys tRNA |
| 3397753 | 3397828 | - | 76 | 28867243 | PSPTO_t38 | - | 01 Gly tRNA |
| 3657062 | 3657137 | - | 76 | 28867243 | PSPTO_t39 | - | 07 Asn tRNA |
| 3771634 | 3771721 | + | 88 | 28867243 | PSPTO_t40 | - | 08 Ser tRNA |
| 3869438 | 3869557 | - | 120 | 28867243 | PSPTO_r10 | - | 5S ribosomal RNA |
| 3869705 | 3872607 | - | 2903 | 28867243 | PSPTO_r11 | - | 23S ribosomal RNA |
| 3872851 | 3872926 | - | 76 | 28867243 | PSPTO_t41 | - | 02 Ala tRNA |
| 3872971 | 3873047 | - | 77 | 28867243 | PSPTO_t42 | - | 14 Ile tRNA |
| 3873144 | 3874682 | - | 1539 | 28867243 | PSPTO_r12 | - | 16S ribosomal RNA |
| 4216266 | 4216350 | - | 85 | 28867243 | PSPTO_t43 | - | 15 Leu tRNA |
| 4216407 | 4216482 | - | 76 | 28867243 | PSPTO_t44 | - | 09 His tRNA |
| 4216534 | 4216610 | - | 77 | 28867243 | PSPTO_t45 | - | 11 Arg tRNA |
| 4316299 | 4316375 | - | 77 | 28867243 | PSPTO_t46 | - | 06 Asp tRNA |
| 4316490 | 4316566 | - | 77 | 28867243 | PSPTO_t47 | - | 06 Asp tRNA |
| 4316635 | 4316710 | - | 76 | 28867243 | PSPTO_t48 | - | 13 Val tRNA |
| 4408094 | 4408170 | - | 77 | 28867243 | PSPTO_t49 | - | 06 Asp tRNA |
| 4408191 | 4408266 | - | 76 | 28867243 | PSPTO_t50 | - | 13 Val tRNA |
| 4458619 | 4458708 | - | 90 | 28867243 | PSPTO_t51 | - | 08 Ser tRNA |
| 4476434 | 4476509 | - | 76 | 28867243 | PSPTO_t52 | - | 10 Lys tRNA |
| 4498448 | 4498524 | + | 77 | 28867243 | PSPTO_t53 | - | 16 Met tRNA |
| 4498716 | 4498792 | + | 77 | 28867243 | PSPTO_t54 | - | 16 Met tRNA |
| 4787411 | 4787484 | + | 74 | 28867243 | PSPTO_t55 | - | 01 Gly tRNA |
| 5061291 | 5061367 | - | 77 | 28867243 | PSPTO_t56 | - | 16 Met tRNA |
| 5061463 | 5061548 | - | 86 | 28867243 | PSPTO_t57 | - | 15 Leu tRNA |
| 5592964 | 5593050 | + | 87 | 28867243 | PSPTO_t58 | - | 15 Leu tRNA |
| 5593211 | 5593297 | + | 87 | 28867243 | PSPTO_t59 | - | 15 Leu tRNA |
| 6074544 | 6074619 | + | 76 | 28867243 | PSPTO_t60 | - | 17 Phe tRNA |
| 6097142 | 6097217 | + | 76 | 28867243 | PSPTO_t61 | - | 12 Thr tRNA |
| 6213679 | 6213806 | - | 128 | 28867243 | PSPTO_r16 | - | 5S ribosomal RNA |
| 6213909 | 6214028 | - | 120 | 28867243 | PSPTO_r13 | - | 5S ribosomal RNA |
| 6214176 | 6217078 | - | 2903 | 28867243 | PSPTO_r14 | - | 23S ribosomal RNA |
| 6217322 | 6217397 | - | 76 | 28867243 | PSPTO_t62 | - | 02 Ala tRNA |
| 6217442 | 6217518 | - | 77 | 28867243 | PSPTO_t63 | - | 14 Ile tRNA |
| 6217615 | 6219153 | - | 1539 | 28867243 | PSPTO_r15 | - | 16S ribosomal RNA |